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3 michaesp 1
.TH trace
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.SH NAME
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.B lidar - lidar of meteorological fields along trajectories
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.SH SYNOPSIS
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.B trace
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.I inpfile
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.I outfile
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[
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.I optional arguments
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]
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.SH DESCRIPTION
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Get pseudo-lidar of meteorological fields along the trajectories given in the input file 
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.I inpfile
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and write the field to a netCDF file
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.I outfile.
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The horizontal axis in the netCDF file corresponds to the trajectory times, the vertical axis gives the pressure in hPa (by default, from 100 to 1000 hPa: it can be changet with optional argument '-pmin', '-pmax', '-centering'). By default, the pseudo lidar is taken at a fixed set of pressure levels between 100 and 1000 hPa. If the option '-centering' is selected, the pressure levels are relative to the trajectory position.
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The meteorological fields for the pseudo lidar are listed in a 
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.I
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tracing file 
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(default: tracevars).  Note that the tracevars file has the same format as for 
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.I trace
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but that all online calculations in the tracing file are neglected.
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.SH PARAMETERS
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.TP 15
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.I inpfile
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input trajectory file; the appendix determines the format (see
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.B reformat 
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for details).
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.TP 15
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.I  outfile
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output netCDF file for the pseudo-lidar fields. 
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.SH OUTPUT FIELDS
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.TP 5
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.B - [ FIELD_SUM | FIELD_MEAN ]
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Sum or mean of the lidar field FIELD, depending on the optional parameter '-sum' (default) or '-mean'. For instance, if potential temperature TH is passed as a lidar field, then TH_MEAN would contain the mean over all trajectories. The horizontal axis coincides with the times on the trajectory file; the vertical axis depends on the mode. By default, it goes from 100 hPa to 1000 hPa, within 100 steps. If '-centering' is passed as argument, the pressure levels are always relative to the trajectory position.
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.TP 5
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.B - FIELD_CNT
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Number of values contributing to FIELD_SUM and FIELD_MEAN. This value is variable because the following cases do not contribute to the output field FIELD_SUM/MEAN: (a) if the position is outside the data domain of the input P files; (b) if the position falls below topography; (c) if the trajectory position is invalid; and (d) if the lidar field has a missing value flag set.
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.TP 5
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.B - POSITION
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Position of all trajectories contributing to the lidar composite. By default, the vertical position of the trajectories between 100 hPA and 1000 hPa can be visualised in this way. If '-centering' is selected, the POSITION corresponds to a single line because then all pressure positions are relative to the trajectory height, i.e. a pressure of 0 hPa on tghe vertical axis corresponds to the trajectory position.
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.SH TRACING FILE
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Normally the meteorological fields for tracing are listed in a file with name 
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.B "tracevars". 
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The name of the tracing file can be changed with the optional argument "-v" (see below). The format of the tracing file is as follows:
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.br
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.TP 5
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Format
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.I field
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.I scale
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.I computation 
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.I prefix  
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.TP 5 
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Examples
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.B - TH 1. 0 S : 
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pseudo lidar of potential temperature (TH), scale it with 1 (no scaling); it is available on the S file (no computation is needed: 0).
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.br
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.B - Q 1000. 0 P :
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pseudo lidar of specific humidity (Q), scale it with 1000 to have g/kg; it is available on the P file (no computation is needed: 0).
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.SH OPTIONAL ARGUMENTS
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.TP 15
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.TP 15
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.I -i hours
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time increments (in hours) for input P and  S files. If not explicitely specified, this is determined from the P and S files i
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n the current directory.
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.TP 15
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.I -v varfile
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Change the name of the tracing file from its default value "tracevars" to "varfile".
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.TP 15
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.I -f field scale
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Trace field (with scaling scale) along the trajectories; the computation flag and the prefix for the data file is automatically set. This options allows the quick tracing of a field, without specifying a tracing file.
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.TP 15
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.I -changet
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flag whether the times of the P and S files should be changed or not before a calculation; the default is that the
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times are 
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.B not 
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changed. 
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.TP 15
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.I -noclean
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flag whether parameter and criterion files should be kept; this is particularly helpful for debugging.
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.TP 15
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.I -timecheck
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enforce a time check on the data files
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.TP 15
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.I -nearest
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Do no interpolation between grid points; just take the nearest neighbor! This option is useful, if a discrete input field is given (e.g. labels), where interpolated values are meaningless.
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.TP 15
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.I [-sum|-mean]
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If '-sum' (the default) is chosen and several trajectories are on the input file, then the sum of all pseudo lidar fields is written to the output file; otherwise, for '-mean', the mean of all pseudo lidar fields is written.
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.TP 15
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.I -pmin value
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Set the lower pressure limit for the pseudo lidar. Default is 100 hPa.
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.TP 15
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.I -pmax value
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Set the upper pressure limit for the pseudo lidar. Default is 1000 hPa.
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.TP 15
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.I -npre value
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Set the number of pressure levels between 'pmin' and 'pmax. Default is 100.
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.TP 15
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.I -centering
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Select the pressure levels relative to the trajectory position; by default the pressure levels are given as absolute heights between 100 and 1000 hPa. If '-centering' is chosen and no explicit limits are specified with 'pmin' and 'pmax', the limits are set to pmin=-500 hPa and pmax=500 hPa.
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.SH EXAMPLES
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.TP 5
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.B [1] lidar TRAJECTORY.1 LIDAR 
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Read the trajectory file TRAJECTORY.1 and get a composite pseudo-lidar from 100 to 1000 hPa along the the trajectories. If there are several trajectories on TRAJECTORY.1, the sum is written to the netCDF file LIDAR. The fields of which a pseudo lidar is calculated are listed in the file 'tracevars'. 
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.TP 5
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.B [2] lidar TRAJECTORY.1 LIDAR -pmin 200 -pmax 500
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As in [1], but the upper and lower limits of the pseudo lidar are set to 200 and 500 hPa.
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.TP 5
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.B [2] lidar TRAJECTORY.1 LIDAR -centering 
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As in [1], but the lidar pressure levels are not fixed: They are taken relative to the trajectory height.
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.SH AUTHOR
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Written by Michael Sprenger and Heini Wernli (April 2012).