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3 michaesp 1 
#!/bin/csh
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# Set Lagranto
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set LAGRANTO = ${LAGRANTOBASE}.${MODEL}
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# Write usage information
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if ( ${#argv} == 0) then
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  echo
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  ${LAGRANTO}/bin/lagrantohelp extract short
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  echo
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  exit 0
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endif
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# Set the input and output filenames
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set inpfile = $1
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set outfile = $2
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shift; shift;
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# Handle optional arguments (get a list, remove , and / separators)
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set mode=$1
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shift;
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set str=
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while ( $#argv > 0 )
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   set str = "${str} $1"
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   shift
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end
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set str=`echo $str | sed -e "s/,//g"`
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set str=`echo $str | sed -e "s/\///g"`
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# Check the mode is valid
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if ( "${mode}" == "-var"      )  goto next
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if ( "${mode}" == "-time"     )  goto next
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if ( "${mode}" == "-tra"      )  goto next
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if ( "${mode}" == "-startf"   )  goto next
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if ( "${mode}" == "-index"    )  goto next
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if ( "${mode}" == "-boolean"  )  goto next
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if ( "${mode}" == "-pattern"  )  goto next
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if ( "${mode}" == "-leaving"  )  goto next
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if ( "${mode}" == "-staying"  )  goto next
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echo " Invalid mode ${mode}..."
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exit 1
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next:
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# Set program names
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set prog1=${LAGRANTO}/goodies/extract
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set prog2=${LAGRANTO}/goodies/trainfo.sh
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# Get trajectory dimensions
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set dim=`${prog2} ${inpfile} dim`
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# Run program
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\rm -f extract.param
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echo \"${inpfile}\"  >! extract.param
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echo \"${outfile}\"  >> extract.param
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echo \"${mode}\"     >> extract.param
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echo ${dim}          >> extract.param
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echo \"${str}\"      >> extract.param
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${prog1}
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#\rm -f extract.param
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exit 0
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