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% ----------------------------------------------------------------------
% Read a trajectory file
% ----------------------------------------------------------------------
function out = read_trajectory(filename);
% Open the trajectory file
fid = fopen(filename,'r')
% Read the info line (tra.info)
line = textscan(fid,'%s',1,'delimiter','\n');
tra.info = line{1};
% Read the line with field description (skip empty lines)
textscan(fid,'%s',1,'delimiter','\n');
line = textscan(fid,'%s',1,'delimiter','\n');
textscan(fid,'%s',1,'delimiter','\n');
line = char(line{1});
% Get the names of the fields (tra.field, tra.nfield)
indl = 1;
indr = 1;
tra.nfield = 0;
while ( indl <= length(line) )
while ( line(indl) == ' ' )
indl=indl+1;
end
indr=indl;
while ( (line(indr) ~= ' ') & (indr < length(line)) )
indr=indr+1;
end
tra.nfield = tra.nfield + 1;
tra.field(tra.nfield) = cellstr(line(indl:indr));
indl = indr + 1;
end
% Get the number of times for a single trajectory (tra.ntime)
fpos = ftell(fid);
textscan(fid,'%s',1,'delimiter','\n');
line = textscan(fid,'%s',1,'delimiter','\n');
tra.ntime = 0;
while ( ~ strcmp(cellstr(line{1}),'') )
line = textscan(fid,'%s',1,'delimiter','\n');
tra.ntime = tra.ntime + 1;
end
fseek(fid,fpos,'bof');
% Read the trajectories
format = '';
for i=1:tra.nfield
format = [ format '%n' ];
end
lines = textscan(fid,format);
% Set the total number of trajectories
tra.ntra = length(lines{1})/tra.ntime;
% Attribute the field names to the columns
for i=1:tra.nfield
name = char(tra.field(i));
tra.(name) = lines{i};
end
% Attribute a unique label to each trajectory
tra.label = 1+floor( (0:tra.ntra*tra.ntime-1) / tra.ntime )';
% Close trajectory file
fclose(fid);
% Return the output structure
out = tra;