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3 michaesp 1
;-------------------------------------------------------------------------------------;
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;		Trajectory Plot
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; Assumes Lagranto lsl-file style output with five
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; header lines
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;-------------------------------------------------------------------------------------;
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;-------------------------------------------------------------------------------------;
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; Loading Libraries
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;-------------------------------------------------------------------------------------;
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load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl"   
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load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_csm.ncl" 
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load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/contributed.ncl"
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;-------------------------------------------------------------------------------------;
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; Read trajectory file 
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;-------------------------------------------------------------------------------------;
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; --------- Name of trajectory file --------------------------------------------------;
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filename="trajectory.lsl"                          
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;---------- Read file ----------------------------------------------------------------;
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delim	= " "                                              ; Delimiting character
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nhead   = 5                                                ; # header lines
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head	= readAsciiHead(filename,nhead-1)		   ; Read header lines 
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ncol    = str_fields_count(head(2),delim)                  ; # columns
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data	= asciiread(filename,-1,"float")		   ; Read data in as float
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n       = dimsizes(data);                                  ; Number of entries in data
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ifirst  = 4                                                ; First data element
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ifinal  = n-1                                              ; Last data element
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timestp = data(ifirst+ncol) - data(ifirst)                 ; Time step of trajectories
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period  = data(ifinal-ncol+1)                              ; Time period of trajectories
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ntim    = floattoint( period/timestp + 1 )                 ; # times
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ntra    = floattoint( (n-ifirst) / (ntim * ncol ) )        ; # trajectories
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traj    = onedtond(data(ifirst:ifinal),(/ntra,ntim,ncol/)) ; 3d trajectory array 
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vars    = str_split(head(2),delim)                         ; Field names (columns)
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;-------------- Add meta information --------------------------------------------------;
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; Add some attributes to the variable
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traj@HOUR        = stringtoint( str_get_cols(head(0),22,23) )
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traj@DAY         = stringtoint( str_get_cols(head(0),19,20) )
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traj@MONTH       = stringtoint( str_get_cols(head(0),17,18) )
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traj@YEAR        = stringtoint( str_get_cols(head(0),13,16) )
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traj@FIELD_NAMES = vars
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traj@MODEL       = "Lagranto"
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; Set names of dimensions and assign values
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traj!0    = "TRA"
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traj!1    = "TIME"
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traj!2    = "FIELD"
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traj&TIME = fspan(0,period,ntim)
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;-------------------------------------------------------------------------------------;
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; Plot trajectories
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;-------------------------------------------------------------------------------------;
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; --------------- Open Workstation and Colormap --------------------------------------
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wks  = gsn_open_wks("png","tra")		   ; open workstation
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gsn_define_colormap(wks,"temp_19lev")		   ; use the BlueDarkRed18 colormap
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cmap = gsn_retrieve_colormap(wks)	           ; colormap
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; --------------- General resources for plot -----------------------------------------
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mres		          = True	           ; map resource
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mres@gsnDraw    	  = False                  ; don't draw
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mres@gsnFrame   	  = False                  ; don't advance frame
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mres@tiMainString         = "Trajectories"	   ; set the main title
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mres@tiMainFont	          = "0_times_roman"        ; font of main title
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mres@gsnMaximize	  = True		   ; Maximize plot
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; ----------------- World map --------------------------------------------------------
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mres@mpMaxLatF            = 70   		   ; choose subregion           
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mres@mpMinLatF            = 0                      ; of world map
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mres@mpMaxLonF            = 100
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mres@mpMinLonF            = 0
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mres@mpFillOn	          = False                  ; color land
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mres@mpOutlineOn	  = True                   ; outline land/sea boarders
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map = gsn_csm_map_ce(wks,mres)                     ; Draw world map 
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draw(map)
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; ----------------- Polyline (including coloring of trajectories ) --------------------
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; --- Specify the coloring field
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cnField                  = "p"                          ; Coloring according to pressure
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cnIndex                  = 3                            ; Column index for coloring field
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cnLevels 		 = fspan(200,1000,17)		; Coloring levels
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cnLabels                 = flt2string(cnLevels)         ; Labels
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; --- Resources for the polylines (except for color)
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pres		  	 = True                         ; polyline resource
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pres@tfDoNDCOverlay      = True 
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pres@gsLineThicknessF    = 3.0                          ; line thickness    
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; --- Resources for the colorbar/labelbar
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lres                          = True
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lres@vpWidthF                 = 0.60                    ; Width of Labelbar
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lres@vpHeightF                = 0.10                    ; Height of Labelbar
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lres@lbPerimOn                = False                   ; Turn off perimeter.
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lres@lbOrientation            = "Horizontal"	        ; Default is "Vertical"
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lres@amLabelBarOrthogonalPosF = -1.0
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lres@lbLabelAlignment         = "InteriorEdges"         ; Default is "BoxCenters".
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lres@lbFillColors             = cmap(2:,:)              ; Colors for boxes.
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lres@lbMonoFillPattern        = True                    ; Fill them all solid.
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lres@lbLabelFontHeightF       = 0.015                   ; Font Height
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lres@lbLabelAutoStride        = True                    ; Auto correct labels
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lres@vpYF                     = 0.15                    ; location of left edge
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lres@vpXF                     = 0.22                    ; location of top edge
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; --- Draw polylines 
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do i = 0,ntra-1                                         ; Loop over all trajecories
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  x = traj(i,0:(ntim-1),1)                              ; Longitudes for trajectory i
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  y = traj(i,0:(ntim-1),2)                              ; Latitudes for trajectory i
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  do k = 0,ntim-2                                       ; Loop over all times
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      pres@gsLineColor = GetFillColor(cnLevels,cmap,traj(i,k,cnIndex))   ; color of polyline
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      gsn_polyline  (wks,map,(/x(k),x(k+1)/),(/y(k),y(k+1)/),pres)       ; draw polyline
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  end do	
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end do
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; --- Draw colorbar/labelbar
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gsn_labelbar_ndc(wks,dimsizes(cnLevels)+1,cnLabels,0.2,0.2,lres)
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; ----------------- Markers ----------------------------------------------------------------
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; --- Resources for the markers
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kres			 = True				; marker resource
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kres@gsMarkerSizeF       = 5.0         			; marker size
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kres@gsMarkerColor       = "black"			; marker color
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; --- Draw markers
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do i = 0,ntra-1                                         ; Loop over all trajecories
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  x = traj(i,0:(ntim-1),1)                              ; Longitudes for trajectory i
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  y = traj(i,0:(ntim-1),2)                              ; Latitudes for trajectory i
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  do k = 0,ntim-2,5                                       ; Loop over all times
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      gsn_polymarker(wks,map,x(k),y(k),kres)		; mark position
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  end do	
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end do
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; ----------------- Advance frame ----------------------------------- --------------------
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frame(wks) 
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