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.TH trace
.SH NAME
.B lidar - lidar of meteorological fields along trajectories
.SH SYNOPSIS
.B trace
.I inpfile
.I outfile
[
.I optional arguments
]
.SH DESCRIPTION
Get pseudo-lidar of meteorological fields along the trajectories given in the input file 
.I inpfile
and write the field to a netCDF file
.I outfile.
The horizontal axis in the netCDF file corresponds to the trajectory times, the vertical axis gives the pressure in hPa (by default, from 100 to 1000 hPa: it can be changet with optional argument '-pmin', '-pmax', '-centering'). By default, the pseudo lidar is taken at a fixed set of pressure levels between 100 and 1000 hPa. If the option '-centering' is selected, the pressure levels are relative to the trajectory position.
The meteorological fields for the pseudo lidar are listed in a 
.I
tracing file 
(default: tracevars).  Note that the tracevars file has the same format as for 
.I trace
but that all online calculations in the tracing file are neglected.
.SH PARAMETERS
.TP 15
.I inpfile
input trajectory file; the appendix determines the format (see
.B reformat 
for details).
.TP 15
.I  outfile
output netCDF file for the pseudo-lidar fields. 
.SH OUTPUT FIELDS
.TP 5
.B - [ FIELD_SUM | FIELD_MEAN ]
Sum or mean of the lidar field FIELD, depending on the optional parameter '-sum' (default) or '-mean'. For instance, if potential temperature TH is passed as a lidar field, then TH_MEAN would contain the mean over all trajectories. The horizontal axis coincides with the times on the trajectory file; the vertical axis depends on the mode. By default, it goes from 100 hPa to 1000 hPa, within 100 steps. If '-centering' is passed as argument, the pressure levels are always relative to the trajectory position.
.TP 5
.B - FIELD_CNT
Number of values contributing to FIELD_SUM and FIELD_MEAN. This value is variable because the following cases do not contribute to the output field FIELD_SUM/MEAN: (a) if the position is outside the data domain of the input P files; (b) if the position falls below topography; (c) if the trajectory position is invalid; and (d) if the lidar field has a missing value flag set.
.TP 5
.B - POSITION
Position of all trajectories contributing to the lidar composite. By default, the vertical position of the trajectories between 100 hPA and 1000 hPa can be visualised in this way. If '-centering' is selected, the POSITION corresponds to a single line because then all pressure positions are relative to the trajectory height, i.e. a pressure of 0 hPa on tghe vertical axis corresponds to the trajectory position.
.SH TRACING FILE
Normally the meteorological fields for tracing are listed in a file with name 
.B "tracevars". 
The name of the tracing file can be changed with the optional argument "-v" (see below). The format of the tracing file is as follows:
.br
.TP 5
Format
.I field
.I scale
.I computation 
.I prefix  
.TP 5 
Examples
.B - TH 1. 0 S : 
pseudo lidar of potential temperature (TH), scale it with 1 (no scaling); it is available on the S file (no computation is needed: 0).
.br
.B - Q 1000. 0 P :
pseudo lidar of specific humidity (Q), scale it with 1000 to have g/kg; it is available on the P file (no computation is needed: 0).
.SH OPTIONAL ARGUMENTS
.TP 15
.TP 15
.I -i hours
time increments (in hours) for input P and  S files. If not explicitely specified, this is determined from the P and S files i
n the current directory.
.TP 15
.I -v varfile
Change the name of the tracing file from its default value "tracevars" to "varfile".
.TP 15
.I -f field scale
Trace field (with scaling scale) along the trajectories; the computation flag and the prefix for the data file is automatically set. This options allows the quick tracing of a field, without specifying a tracing file.
.TP 15
.I -changet
flag whether the times of the P and S files should be changed or not before a calculation; the default is that the
times are 
.B not 
changed. 
.TP 15
.I -noclean
flag whether parameter and criterion files should be kept; this is particularly helpful for debugging.
.TP 15
.I -timecheck
enforce a time check on the data files
.TP 15
.I -nearest
Do no interpolation between grid points; just take the nearest neighbor! This option is useful, if a discrete input field is given (e.g. labels), where interpolated values are meaningless.
.TP 15
.I [-sum|-mean]
If '-sum' (the default) is chosen and several trajectories are on the input file, then the sum of all pseudo lidar fields is written to the output file; otherwise, for '-mean', the mean of all pseudo lidar fields is written.
.TP 15
.I -pmin value
Set the lower pressure limit for the pseudo lidar. Default is 100 hPa.
.TP 15
.I -pmax value
Set the upper pressure limit for the pseudo lidar. Default is 1000 hPa.
.TP 15
.I -npre value
Set the number of pressure levels between 'pmin' and 'pmax. Default is 100.
.TP 15
.I -centering
Select the pressure levels relative to the trajectory position; by default the pressure levels are given as absolute heights between 100 and 1000 hPa. If '-centering' is chosen and no explicit limits are specified with 'pmin' and 'pmax', the limits are set to pmin=-500 hPa and pmax=500 hPa.
.SH EXAMPLES
.TP 5
.B [1] lidar TRAJECTORY.1 LIDAR 
Read the trajectory file TRAJECTORY.1 and get a composite pseudo-lidar from 100 to 1000 hPa along the the trajectories. If there are several trajectories on TRAJECTORY.1, the sum is written to the netCDF file LIDAR. The fields of which a pseudo lidar is calculated are listed in the file 'tracevars'. 
.TP 5
.B [2] lidar TRAJECTORY.1 LIDAR -pmin 200 -pmax 500
As in [1], but the upper and lower limits of the pseudo lidar are set to 200 and 500 hPa.
.TP 5
.B [2] lidar TRAJECTORY.1 LIDAR -centering 
As in [1], but the lidar pressure levels are not fixed: They are taken relative to the trajectory height.
.SH AUTHOR
Written by Michael Sprenger and Heini Wernli (April 2012).