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michaesp |
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#!/bin/csh
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# ---------------------------------------------------------------------
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# Usage
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# ---------------------------------------------------------------------
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# Set Lagranto
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set LAGRANTO = ${LAGRANTOBASE}.${MODEL}
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# Write usage information
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if ( (${#argv} == 0) ) then
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echo
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${LAGRANTO}/bin/lagrantohelp lagranto short
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echo
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exit 0
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endif
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# Check whether LAGRANTO was set with setenv
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set test = `setenv | grep LAGRANTO`
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if ( "${test}" == "" ) then
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echo "---------------------------------------------------------------------"
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echo "Please set environmental variable <LAGRANTO> to your source directory"
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echo 'csh > setenv LAGRANTO ${TO_YOUR_LAGRANTO_INSTALLATION}'
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echo "---------------------------------------------------------------------"
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exit 1
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endif
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# ---------------------------------------------------------------------
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# Set some general parameters
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# ---------------------------------------------------------------------
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# Set the prefix of the primary and secondary data files
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set charp = 'P'
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set chars = 'S'
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# Set the name of the run script
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set runscript = "runscript"
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# Remember the calling directory
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set calldir = $PWD
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# ---------------------------------------------------------------------
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# Parameter handling
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# ---------------------------------------------------------------------
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# Write title
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echo
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echo '========================================================='
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echo ' *** START OF LAGRANTO *** '
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echo
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# Save the complete argument list
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set lagranto_call = "$*"
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echo '---- HANDLE ARGUMENTS -----------------------------------'
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echo
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# Get fixed arguments
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if (${#argv} == 1) then
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set mode = '-open'
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set caseid = "$1"
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shift
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else if (${#argv} == 2) then
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set mode = "$1"
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set caseid = "$2"
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shift
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shift
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else
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set caseid = "$1"
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set startdate = "$2"
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set enddate = "$3"
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set startf = "$4"
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set select = "$5"
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set mode = "runlagranto"
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shift
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shift
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shift
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shift
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shift
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endif
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# Split <caseid> into base and appendix
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set casebase = `(echo $caseid | awk -F "." '{print $1}')`
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set appendix = `(echo $caseid | awk -F "." '{print $2}')`
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if ( "${appendix}" != "" ) then
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set appendix = ".${appendix}"
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endif
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# Set the directories (depending on <caseid>)
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if ( "${casebase}" == "local" ) then
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set cdfdir = $PWD
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set tradir = $PWD
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else if ( "${casebase}" == "interim" ) then
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set cdfdir = /net/dansgaard/atmosdyn/erainterim/cdf/
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set tradir = $PWD
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else if ( "${casebase}" == "analysis" ) then
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set cdfdir = 'TO_BE_SPECIFIED'
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set tradir = $PWD
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echo "ERROR: caseid (analysis) not yet implemented"
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exit 1
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else if ( "${casebase}" == "forecast" ) then
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set cdfdir = 'TO_BE_SPECIFIED'
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set tradir = $PWD
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echo "ERROR: caseid (forecast) not yet implemented"
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exit 1
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else
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set cdfdir = ${HOME}/cdf/${casebase}
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set tradir = ${HOME}/tra/${casebase}
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endif
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# Change to the run directory if requested
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if ( "${mode}" == "-open" ) then
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set count = 0
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foreach folder ( ${tradir}/ntr_*_${caseid}_* )
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@ count = ${count} + 1
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echo "[${count}] ${folder}"
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end
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echo
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echo "Please select directory [0...${count}]"
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set id = $<
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set count = 0
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foreach folder ( ${tradir}/ntr_*_${caseid}_* )
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@ count = ${count} + 1
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if ( "${count}" == "${id}" ) then
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cd ${folder}
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xterm &
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endif
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end
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exit 0
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endif
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# Remove the whole run directory if requested
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if ( "${mode}" == "-remove" ) then
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set count = 0
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foreach folder ( ${tradir}/ntr_*_${caseid}_* )
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@ count = ${count} + 1
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echo "[${count}] ${folder}"
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end
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echo
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echo "Please select directory [0...${count}, all]"
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set id = $<
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set count = 0
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foreach folder ( ${tradir}/ntr_*_${caseid}_* )
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@ count = ${count} + 1
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if ( ( "${count}" == "${id}" ) | ( "${id}" == "all" ) ) then
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\rm -r ${folder}
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endif
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end
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exit 0
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endif
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# Show the trajectory file
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if ( "${mode}" == "-show" ) then
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set count = 0
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foreach folder ( ${tradir}/ntr_*_${caseid}_* )
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@ count = ${count} + 1
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echo "[${count}] ${folder}"
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end
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echo
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echo "Please select directory [0...${count}]"
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set id = $<
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set count = 0
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foreach folder ( ${tradir}/ntr_*_${caseid}_* )
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@ count = ${count} + 1
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if ( "${count}" == "${id}" ) then
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cd ${folder}
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set filename = ` sed -ne '9,9p' runscript.sh | cut -c 2-`
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${LAGRANTO}/goodies/trainfo.sh ${filename} list | less
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endif
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end
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exit 0
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endif
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# Decide whether <select> is a file or an explicit criterion
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set flag_select = 'file'
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set test = `echo ${select} | grep ':' | wc -c`
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if ( "${test}" != "0" ) then
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set flag_select = 'criterion'
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endif
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# Decide whether <startf> is a file or an explicit criterion
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set flag_startf = 'file'
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set test = `echo ${startf} | grep ' ' | wc -c`
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if ( "${test}" != "0" ) then
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set flag_startf = 'point'
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endif
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set test = `echo ${startf} | grep '@' | wc -c`
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if ( "${test}" != "0" ) then
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set flag_startf = 'criterion'
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endif
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# Write some status information
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echo " Case ID : ${caseid}"
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echo " Start date : ${startdate}"
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echo " End date : ${enddate}"
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if ( "${flag_startf}" == "criterion" ) then
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echo " Start file : ${startf} [criterion] -> startf.criterion [file]"
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else if ( "${flag_startf}" == "file" ) then
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echo " Start points : ${startf} [file]"
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else if ( "${flag_startf}" == "point" ) then
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echo " Start points : ${startf} [point] -> startf [file]"
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endif
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if ( "${flag_select}" == "criterion" ) then
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echo " Selection : ${select} [criterion] -> selectf.criterion [file]"
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else
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echo " Selection : ${select} [file]"
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endif
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echo
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# Set defaults for flags
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set jumpflag = ""
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set tracefile = "tracevars"
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set outfile = "lsl_${startdate}"
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set keepflag = ""
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set prepflag = ""
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set logfile = "${runscript}.logfile"
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set regionf = "regionf"
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set changet = "false"
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# Handle flags
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while ( $#argv > 0 )
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switch ( $argv[1] )
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echo $argv[1]
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case -j
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set jumpflag = "-j"
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echo " Flag '-j [jump]' -> True "
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echo
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breaksw
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case -prep
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set prepflag = "prep"
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echo " Flag '-prep [prepare only]' -> ${prepflag} "
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echo
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breaksw
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case -noclean
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set keepflag = "keep"
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echo " Flag '-noclean [no cleaning]' -> ${keepflag} "
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echo
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breaksw
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case -o
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set outfile = $argv[2]
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echo " Flag '-o [output]' -> ${outfile} "
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echo
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breaksw
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case -v
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set tracefile = $argv[2]
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echo " Flag '-v [tracevars]' -> ${tracefile} "
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echo
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shift
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breaksw
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case -r
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set regionfile = $argv[2]
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echo " Flag '-r [regionfile]' -> ${regionfile} "
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echo
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shift
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breaksw
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case -log
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set logfile = "/dev/stdout"
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echo " Flag '-v [log]' -> ${logfile} "
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breaksw
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case -changet
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set changet = "true"
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echo " Flag '-changet [change times]'-> True "
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echo
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breaksw
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endsw
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shift;
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end
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# Decide whether a tracevars file is given or not
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if ( -f ${tradir}/${tracefile} ) then
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set flag_tracevars = 'file'
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else
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set flag_tracevars = 'nil'
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endif
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echo
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if ( "${flag_tracevars}" == "file" ) then
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echo " Trace Vars : ${tracefile} [file]"
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else
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echo " Trace Vars : [no fields are traced]"
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endif
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echo
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# Set the name of the run directory (forward/backward distinction)
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set dir = 'f'
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set range = `${LAGRANTO}/bin/gettidiff.sh ${enddate} ${startdate}`
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if ( ${range} < 0 ) then
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set dir = 'b'
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set range = `${LAGRANTO}/bin/gettidiff.sh ${startdate} ${enddate}`
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endif
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set rundir = ${tradir}/ntr_${startdate}_${dir}${range}_${caseid}
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if ( "${flag_startf}" == "criterion" ) then
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set rundir = "${rundir}_startf"
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else if ( "${flag_startf}" == "point" ) then
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set rundir = "${rundir}_startf"
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else if ( "${flag_startf}" == "file" ) then
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set rundir = "${rundir}_${startf}"
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endif
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if ( "${flag_select}" != "file" ) then
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set rundir = "${rundir}_selectf"
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else
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set rundir = "${rundir}_${select}"
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endif
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# Write directory names
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echo '---- DIRECTORIES ----------------------------------------'
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echo
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echo " CDF = ${cdfdir}"
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echo " TRA = ${tradir}"
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echo " RUN = ${rundir}"
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# Check whether CDF and TRA directories exist
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if ( ! -d ${cdfdir} ) then
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echo 'Cannot find CDF directory ... Stop'
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exit 1
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endif
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if ( ! -d ${tradir} ) then
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echo 'Cannot find TRA directory ... Stop'
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exit 1
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endif
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# Create the run directory
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if ( ! -d ${rundir} ) then
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mkdir ${rundir}
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endif
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354 |
if ( ! -d ${rundir} ) then
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echo 'Cannot create RUN directory ... Stop'
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exit 1
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endif
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358 |
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# ---------------------------------------------------------------------
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360 |
# Handle the time specifier - startdate, enddate
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# ---------------------------------------------------------------------
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echo
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echo '---- TIME RANGE -----------------------------------------'
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echo
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# Check format of start and end date - must be the same
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set ns=`echo $startdate | sed -e 's/_[0-9]*//' | wc -c`
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set ne=`echo $enddate | sed -e 's/_[0-9]*//' | wc -c`
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if ( $ns != $ne ) then
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echo " ERROR: start and end date must be in the same format ***"
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exit 1
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endif
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374 |
if ( $ns != 9 ) then
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echo " ERROR: Date format must be yyyymmdd ***"
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exit 1
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endif
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set ns=`echo $startdate | sed -e 's/[0-9]*_//' | wc -c`
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379 |
set ne=`echo $enddate | sed -e 's/[0-9]*_//' | wc -c`
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380 |
if ( $ns != $ne ) then
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381 |
echo " ERROR: start and end date must be in the same format ***"
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exit 1
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endif
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384 |
if ( ( $ns != 5 ) & ( $ns != 3 ) ) then
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385 |
echo " ERROR: Time format must be hh(mm) ***"
|
|
|
386 |
exit 1
|
|
|
387 |
endif
|
|
|
388 |
|
|
|
389 |
# Split the start and end date into <yymmdd_hh and mm>
|
|
|
390 |
set startdate_ymdh = `echo $startdate | cut -c 1-11`
|
|
|
391 |
set startdate_min = `echo $startdate | cut -c 12-13`
|
|
|
392 |
if ( $startdate_min == "" ) set startdate_min = 00
|
|
|
393 |
|
|
|
394 |
set enddate_ymdh = `echo $enddate | cut -c 1-11`
|
|
|
395 |
set enddate_min = `echo $enddate | cut -c 12-13`
|
|
|
396 |
if ( $enddate_min == "" ) set enddate_min = 00
|
|
|
397 |
|
|
|
398 |
# Get the time difference between <start_ymdh> and <end_ymdh> date
|
|
|
399 |
# Decide whether trajectoriesare forward or backward
|
|
|
400 |
set timediff_hh = `${LAGRANTO}/goodies/gettidiff ${enddate_ymdh} ${startdate_ymdh}`
|
|
|
401 |
|
|
|
402 |
if ( $timediff_hh == 0 ) then
|
|
|
403 |
if ( $enddate_min > $startdate_min ) then
|
|
|
404 |
set direction = f
|
|
|
405 |
set idir = 1
|
|
|
406 |
else
|
|
|
407 |
set direction = b
|
|
|
408 |
set idir = -1
|
|
|
409 |
endif
|
|
|
410 |
else if ( $timediff_hh > 0 ) then
|
|
|
411 |
set direction = f
|
|
|
412 |
set idir = 1
|
|
|
413 |
else
|
|
|
414 |
set direction = b
|
|
|
415 |
set idir = -1
|
|
|
416 |
@ timediff_hh = $idir * $timediff_hh
|
|
|
417 |
endif
|
|
|
418 |
|
|
|
419 |
# Get also minutes for time difference, if <start_min> or <end_min> != 0
|
|
|
420 |
set timediff_mm=
|
|
|
421 |
|
|
|
422 |
if ( $startdate_min != 00 || $enddate_min != 00 ) then
|
|
|
423 |
@ min = ( $enddate_min - $startdate_min )
|
|
|
424 |
if ( $min == 0 ) then
|
|
|
425 |
set timediff_mm=
|
|
|
426 |
else if ( $min > 0 ) then
|
|
|
427 |
if ( $idir == 1 ) then
|
|
|
428 |
set timediff_mm=$min
|
|
|
429 |
else
|
|
|
430 |
@ timediff_hh --
|
|
|
431 |
@ timediff_mm = 60 - $min
|
|
|
432 |
endif
|
|
|
433 |
else
|
|
|
434 |
if ( $idir == 1 ) then
|
|
|
435 |
@ timediff_hh --
|
|
|
436 |
@ timediff_mm = 60 + $min
|
|
|
437 |
else
|
|
|
438 |
@ timediff_mm = 0 - $min
|
|
|
439 |
endif
|
|
|
440 |
endif
|
|
|
441 |
endif
|
|
|
442 |
|
|
|
443 |
# Set the reference date equal to the startdate
|
|
|
444 |
set refdate=${startdate}
|
|
|
445 |
|
|
|
446 |
# Write status information
|
|
|
447 |
echo "Time range : ${startdate} -> ${enddate}"
|
|
|
448 |
if ( ${timediff_mm} != "" ) then
|
|
|
449 |
echo "Time difference : ${timediff_hh} h ${timediff_mm} min"
|
|
|
450 |
else
|
|
|
451 |
echo "Time difference : ${timediff_hh} h"
|
|
|
452 |
endif
|
|
|
453 |
echo "Direction : ${direction} (${idir})"
|
|
|
454 |
echo "Reference date : ${refdate}"
|
|
|
455 |
|
|
|
456 |
# ---------------------------------------------------------------------
|
|
|
457 |
# Decide which files are needed and check availability
|
|
|
458 |
# ---------------------------------------------------------------------
|
|
|
459 |
|
|
|
460 |
echo
|
|
|
461 |
echo '---- INPUT FILES ----------------------------------------'
|
|
|
462 |
echo
|
|
|
463 |
|
|
|
464 |
# Change to input data (cdf) directory
|
|
|
465 |
cd ${cdfdir}
|
|
|
466 |
echo
|
|
|
467 |
|
|
|
468 |
# Take the time increment from flag list ('nil', if not defined)
|
|
|
469 |
set timeinc = 'nil'
|
|
|
470 |
|
|
|
471 |
# Find a first data file (if possible corresponding to start/end date
|
|
|
472 |
# If starttime is not a data time, take the first file in the direectory
|
|
|
473 |
if ( $direction == "f" ) then
|
|
|
474 |
set file=${charp}${startdate_ymdh}
|
|
|
475 |
else
|
|
|
476 |
set file=${charp}${enddate_ymdh}
|
|
|
477 |
endif
|
|
|
478 |
if ( ! -f $file ) then
|
|
|
479 |
set file=`ls ${charp}[0-9_]*[0-9] | head -1 | sed -e 's/@//'`
|
|
|
480 |
endif
|
|
|
481 |
|
|
|
482 |
# Determine timeinc (the time difference in hours between two data file)
|
|
|
483 |
# if not already defined with option -i
|
|
|
484 |
if ( ${timeinc} == "nil" ) then
|
|
|
485 |
set date1=`echo $file | cut -c 2-12`
|
|
|
486 |
set n=`ls ${charp}[0-9_]*[0-9] | grep -n $date1 | awk -F: '{print $1}'`
|
|
|
487 |
@ n ++
|
|
|
488 |
set date2=`ls ${charp}[0-9_]*[0-9] | head -$n | tail -1 | cut -c 2-12`
|
|
|
489 |
set timeinc=`${LAGRANTO}/goodies/gettidiff $date2 $date1`
|
|
|
490 |
endif
|
|
|
491 |
if ( $timeinc == 0 ) then
|
|
|
492 |
echo " ERROR: cannot set the time increment between input files ***"
|
|
|
493 |
exit 1
|
|
|
494 |
endif
|
|
|
495 |
|
|
|
496 |
# Search the first file to use
|
|
|
497 |
set flag=0
|
|
|
498 |
set td=
|
|
|
499 |
foreach i ( ${charp}????????_?? )
|
|
|
500 |
|
|
|
501 |
set date = `echo $i | cut -c 2-12`
|
|
|
502 |
set td1 = `${LAGRANTO}/goodies/gettidiff ${startdate_ymdh} ${date}`
|
|
|
503 |
set td2 = `${LAGRANTO}/goodies/gettidiff ${enddate_ymdh} ${date}`
|
|
|
504 |
|
|
|
505 |
if (( $td1 < $timeinc || $td2 < $timeinc ) && ( $td1 >= 0 || $td2 >= 0 )) then
|
|
|
506 |
set datfiles=$date
|
|
|
507 |
if ( $td1 < $timeinc ) set td=$td1
|
|
|
508 |
if ( $td2 < $timeinc ) set td=$td2
|
|
|
509 |
if ( ( $startdate_min > 0 ) || ( $enddate_min > 0 ) ) @ td ++
|
|
|
510 |
goto label2
|
|
|
511 |
endif
|
|
|
512 |
|
|
|
513 |
end
|
|
|
514 |
|
|
|
515 |
# if no P/T-files are available for the specified time period, then $td is
|
|
|
516 |
# still undefined
|
|
|
517 |
if ( $td == "" ) then
|
|
|
518 |
echo " ERROR: no data files available for the specified time period"
|
|
|
519 |
exit 1
|
|
|
520 |
endif
|
|
|
521 |
|
|
|
522 |
# Everything is fine so far: proceed
|
|
|
523 |
label2:
|
|
|
524 |
|
|
|
525 |
# Calculate the number of further files
|
|
|
526 |
@ num = ( $timediff_hh + $td ) / $timeinc + 1
|
|
|
527 |
@ dum1 = ( $num - 1 ) * $timeinc
|
|
|
528 |
@ dum2 = $timediff_hh + $td
|
|
|
529 |
if ( $dum1 != $dum2 ) @ num ++
|
|
|
530 |
|
|
|
531 |
# Get a list of all needed files
|
|
|
532 |
set numfiles=$num
|
|
|
533 |
set sfiles=1
|
|
|
534 |
while ( $num > 1 )
|
|
|
535 |
set date=`${LAGRANTO}/goodies/newtime $date $timeinc`
|
|
|
536 |
if ( ! -f ${charp}${date} ) then
|
|
|
537 |
echo " ERROR: file with primary data is missing for $date"
|
|
|
538 |
exit 1
|
|
|
539 |
else if ( ! -f ${chars}${date} ) then
|
|
|
540 |
set sfiles=0
|
|
|
541 |
set datfiles=`echo $datfiles $date`
|
|
|
542 |
else
|
|
|
543 |
set datfiles=`echo $datfiles $date`
|
|
|
544 |
endif
|
|
|
545 |
@ num --
|
|
|
546 |
end
|
|
|
547 |
|
|
|
548 |
# Write some status information
|
|
|
549 |
echo "Primary file prefix : ${charp}"
|
|
|
550 |
echo "Secondary file prefix : ${chars}"
|
|
|
551 |
echo "Time increment for input files : ${timeinc}"
|
|
|
552 |
echo "# input files : ${numfiles}"
|
|
|
553 |
echo "${charp} files availability : 1"
|
|
|
554 |
echo "${chars} files availability : ${sfiles}"
|
|
|
555 |
echo "First input file : $datfiles[1] "
|
|
|
556 |
echo "Last input file : $datfiles[$numfiles] "
|
|
|
557 |
|
|
|
558 |
|
|
|
559 |
# ---------------------------------------------------------------------
|
|
|
560 |
# Prepare run directory - copy all needed files
|
|
|
561 |
# ---------------------------------------------------------------------
|
|
|
562 |
|
|
|
563 |
echo
|
|
|
564 |
echo '---- PREPARE RUN DIRECTORY ------------------------------'
|
|
|
565 |
echo
|
|
|
566 |
|
|
|
567 |
# Change to run directory
|
|
|
568 |
cd ${rundir}
|
|
|
569 |
echo
|
|
|
570 |
|
|
|
571 |
|
|
|
572 |
# Link cdf input files
|
|
|
573 |
foreach date ( $datfiles )
|
|
|
574 |
if ( -f ${cdfdir}/${charp}${date} ) then
|
|
|
575 |
if ( ! -f ${charp}${date} ) then
|
|
|
576 |
ln -s ${cdfdir}/${charp}${date} ${charp}${date}
|
|
|
577 |
echo "Linking ${date} "
|
|
|
578 |
else
|
|
|
579 |
echo "Existing ${date} "
|
|
|
580 |
endif
|
|
|
581 |
endif
|
|
|
582 |
if ( -f ${cdfdir}/${chars}${date} ) then
|
|
|
583 |
if ( ! -f ${chars}${date} ) then
|
|
|
584 |
ln -sf ${cdfdir}/${chars}${date} ${chars}${date}
|
|
|
585 |
endif
|
|
|
586 |
endif
|
|
|
587 |
end
|
|
|
588 |
|
|
|
589 |
# Change times on netCDF files relative to reference date
|
|
|
590 |
if ( "${changet}" == "true" ) then
|
|
|
591 |
echo
|
|
|
592 |
foreach i ( $datfiles )
|
|
|
593 |
${LAGRANTO}/goodies/changet.sh ${refdate} ${charp}${i}
|
|
|
594 |
end
|
|
|
595 |
if ( ${sfiles} == 1 ) then
|
|
|
596 |
echo
|
|
|
597 |
foreach i ( $datfiles )
|
|
|
598 |
${LAGRANTO}/goodies/changet.sh ${refdate} ${chars}${i}
|
|
|
599 |
end
|
|
|
600 |
endif
|
|
|
601 |
endif
|
|
|
602 |
|
|
|
603 |
# Get the constants file for each file
|
|
|
604 |
set first = 1
|
|
|
605 |
foreach date ( $datfiles )
|
|
|
606 |
set cstname = `ncdump -h ${charp}${date} | grep constants_file_name`
|
|
|
607 |
set cstname = `echo \'${cstname}\' | awk -F\" '{print $2}'`
|
|
|
608 |
if ( -f ${cdfdir}/${cstname} ) then
|
|
|
609 |
if ( ! -f ${cstname} ) then
|
|
|
610 |
ln -s ${cdfdir}/${cstname} ${cstname}
|
|
|
611 |
echo "Linking constants file ${cstname}"
|
|
|
612 |
set first = 0
|
|
|
613 |
else if ( "${first}" == "1" ) then
|
|
|
614 |
echo "Existing constants file ${cstname}"
|
|
|
615 |
set first = 0
|
|
|
616 |
endif
|
|
|
617 |
endif
|
|
|
618 |
end
|
|
|
619 |
|
|
|
620 |
# Copy the tracevars file
|
|
|
621 |
if ( "${flag_tracevars}" == "file" ) then
|
|
|
622 |
if ( -f ${tradir}/${tracefile} ) then
|
|
|
623 |
\cp ${tradir}/${tracefile} .
|
|
|
624 |
endif
|
|
|
625 |
endif
|
|
|
626 |
|
|
|
627 |
# Copy the start file/criterion
|
|
|
628 |
if ( "${flag_startf}" == "criterion" ) then
|
|
|
629 |
\rm -f startf.criterion
|
|
|
630 |
echo ${startf} > startf.criterion
|
|
|
631 |
set startf = "startf.criterion"
|
|
|
632 |
else if ( "${flag_startf}" == "file" ) then
|
|
|
633 |
if ( -f ${tradir}/${startf} ) then
|
|
|
634 |
\cp ${tradir}/${startf} .
|
|
|
635 |
endif
|
|
|
636 |
else if ( "${flag_startf}" == "point" ) then
|
|
|
637 |
\rm -f startf
|
|
|
638 |
echo ${startf} > startf
|
|
|
639 |
set startf = "startf"
|
|
|
640 |
set flag_startf = "file"
|
|
|
641 |
endif
|
|
|
642 |
|
|
|
643 |
# Copy the select file/criterion
|
|
|
644 |
if ( "${flag_select}" == "criterion" ) then
|
|
|
645 |
\rm -f select.criterion
|
|
|
646 |
echo ${select} > select.criterion
|
|
|
647 |
set select = "select.criterion"
|
|
|
648 |
else
|
|
|
649 |
if ( -f ${tradir}/${select} ) then
|
|
|
650 |
\cp ${tradir}/${select} .
|
|
|
651 |
endif
|
|
|
652 |
endif
|
|
|
653 |
|
|
|
654 |
|
|
|
655 |
# ---------------------------------------------------------------------
|
|
|
656 |
# Prepare the run script
|
|
|
657 |
# ---------------------------------------------------------------------
|
|
|
658 |
|
|
|
659 |
echo
|
|
|
660 |
echo '---- PREPARE RUN SCRIPT ---------------------------------'
|
|
|
661 |
echo
|
|
|
662 |
|
|
|
663 |
# Remove runscript if it already exists
|
|
|
664 |
if ( -f ${runscript}.sh ) then
|
|
|
665 |
\rm -f ${runscript}.sh
|
|
|
666 |
endif
|
|
|
667 |
|
|
|
668 |
# Write header
|
|
|
669 |
echo '#\!/bin/csh' >! ${runscript}.sh
|
|
|
670 |
echo "#" >> ${runscript}.sh
|
|
|
671 |
echo "#----- Calling command" >> ${runscript}.sh
|
|
|
672 |
echo "#" >> ${runscript}.sh
|
|
|
673 |
echo "# lagranto ${lagranto_call} " >> ${runscript}.sh
|
|
|
674 |
echo "#" >> ${runscript}.sh
|
|
|
675 |
echo "#----- Output file " >> ${runscript}.sh
|
|
|
676 |
echo "#" >> ${runscript}.sh
|
|
|
677 |
echo "# ${outfile} " >> ${runscript}.sh
|
|
|
678 |
echo "#" >> ${runscript}.sh
|
|
|
679 |
|
|
|
680 |
# Decide whether <create_startf> has to be run
|
|
|
681 |
if ( "${flag_startf}" == "criterion" ) then
|
|
|
682 |
echo "#------ Run <create_startf>" >> ${runscript}.sh
|
|
|
683 |
echo "#" >> ${runscript}.sh
|
|
|
684 |
echo ${LAGRANTO}/bin/create_startf.sh ${startdate} startf \"`cat startf.criterion`\" -t ${tracefile} -regionf ${regionf} >> ${runscript}.sh
|
|
|
685 |
echo "#" >> ${runscript}.sh
|
|
|
686 |
set startf = "startf"
|
|
|
687 |
endif
|
|
|
688 |
|
|
|
689 |
# Check whether startfile is ready
|
|
|
690 |
cat >> ${runscript}.sh <<EOF
|
|
|
691 |
#------ Abort if no startf is available
|
|
|
692 |
#
|
|
|
693 |
if ( ! -f ${startf} ) then
|
|
|
694 |
echo " ERROR: no start file available .... Stop"
|
|
|
695 |
exit 1
|
|
|
696 |
endif
|
|
|
697 |
EOF
|
|
|
698 |
|
|
|
699 |
# Decide wich intermediate format is used (needed for efficient communication between different programs)
|
|
|
700 |
set iform1 = ""
|
|
|
701 |
set iform2 = ""
|
|
|
702 |
if ( "${tracefile}" != "" ) set iform1 = ".4"
|
|
|
703 |
if ( "${select}" != "nil" ) set iform2 = ".4"
|
|
|
704 |
|
|
|
705 |
# Remove all trajectory files which might already be there
|
|
|
706 |
cat >> ${runscript}.sh <<EOF
|
|
|
707 |
#
|
|
|
708 |
#------ Remove existing trajectory files
|
|
|
709 |
#
|
|
|
710 |
if ( -f ${outfile}${iform1} ) then
|
|
|
711 |
\rm -f ${outfile}${iform1}
|
|
|
712 |
endif
|
|
|
713 |
if ( -f ${outfile}${iform2} ) then
|
|
|
714 |
\rm -f ${outfile}${iform2}
|
|
|
715 |
endif
|
|
|
716 |
if ( -f ${outfile} ) then
|
|
|
717 |
\rm -f ${outfile}
|
|
|
718 |
endif
|
|
|
719 |
|
|
|
720 |
EOF
|
|
|
721 |
|
|
|
722 |
# Write call to <caltra> into runscript
|
|
|
723 |
echo "#" >> ${runscript}.sh
|
|
|
724 |
echo "#------ Run <caltra>" >> ${runscript}.sh
|
|
|
725 |
echo "#" >> ${runscript}.sh
|
|
|
726 |
echo ${LAGRANTO}/bin/caltra.sh ${startdate} ${enddate} startf ${outfile}${iform1} ${jumpflag} >> ${runscript}.sh
|
|
|
727 |
|
|
|
728 |
# Check whether caltra was successful
|
|
|
729 |
cat >> ${runscript}.sh <<EOF
|
|
|
730 |
#
|
|
|
731 |
#------ Abort if caltra was not successful
|
|
|
732 |
#
|
|
|
733 |
if ( ! -f ${outfile}${iform1} ) then
|
|
|
734 |
echo " ERROR: caltra failed .... Stop"
|
|
|
735 |
exit 1
|
|
|
736 |
endif
|
|
|
737 |
EOF
|
|
|
738 |
|
|
|
739 |
# Decide whether <trace> has to be run
|
|
|
740 |
if ( "${tracefile}" != "" ) then
|
|
|
741 |
echo "#" >> ${runscript}.sh
|
|
|
742 |
echo "#------ Run <trace>" >> ${runscript}.sh
|
|
|
743 |
echo "#" >> ${runscript}.sh
|
|
|
744 |
echo ${LAGRANTO}/bin/trace.sh ${outfile}${iform1} ${outfile}${iform2} -v ${tracefile} >> ${runscript}.sh
|
|
|
745 |
|
|
|
746 |
endif
|
|
|
747 |
|
|
|
748 |
# Check whether trace was successful
|
|
|
749 |
cat >> ${runscript}.sh <<EOF
|
|
|
750 |
#
|
|
|
751 |
#------ Abort if trace was not successful
|
|
|
752 |
#
|
|
|
753 |
if ( ! -f ${outfile}${iform2} ) then
|
|
|
754 |
echo " ERROR: trace failed .... Stop"
|
|
|
755 |
exit 1
|
|
|
756 |
endif
|
|
|
757 |
EOF
|
|
|
758 |
|
|
|
759 |
# Decide whether <select> has to be run
|
|
|
760 |
if ( "${select}" != "nil" ) then
|
|
|
761 |
echo "#" >> ${runscript}.sh
|
|
|
762 |
echo "#------ Run <select>" >> ${runscript}.sh
|
|
|
763 |
echo "#" >> ${runscript}.sh
|
|
|
764 |
echo ${LAGRANTO}/bin/select.sh ${outfile}${iform2} ${outfile} \"`cat ${select}`\" -regionf ${regionf} >> ${runscript}.sh
|
|
|
765 |
echo "#" >> ${runscript}.sh
|
|
|
766 |
endif
|
|
|
767 |
|
|
|
768 |
# Show runscript on screen
|
|
|
769 |
more ${runscript}.sh
|
|
|
770 |
|
|
|
771 |
# Change runscript to executable
|
|
|
772 |
chmod u+x ${runscript}.sh
|
|
|
773 |
|
|
|
774 |
# Decide whether to stop at this place (only preparation for Lagranto run)
|
|
|
775 |
if ( "${prepflag}" == "prep" ) then
|
|
|
776 |
echo
|
|
|
777 |
echo '---- READY TO RUN ----- ---------------------------------'
|
|
|
778 |
echo
|
|
|
779 |
echo " Would you like to change to the rundirectory [y/n] "
|
|
|
780 |
|
|
|
781 |
set id = $<
|
|
|
782 |
if ( ( "${id}" == "y" ) | ( "${id}" == "Y" ) ) then
|
|
|
783 |
cd ${rundir}
|
|
|
784 |
xterm &
|
|
|
785 |
endif
|
|
|
786 |
|
|
|
787 |
exit 0
|
|
|
788 |
|
|
|
789 |
endif
|
|
|
790 |
|
|
|
791 |
# Define environment variable for the case
|
|
|
792 |
echo
|
|
|
793 |
echo '---- REMEMBER MOST RECENT CALL --------------------------'
|
|
|
794 |
echo
|
|
|
795 |
cd ${calldir}
|
|
|
796 |
if ( -f lagranto.param ) \rm lagranto.param
|
|
|
797 |
echo "${rundir}" >! lagranto.param
|
|
|
798 |
echo "${outfile}" >> lagranto.param
|
|
|
799 |
cd ${rundir}
|
|
|
800 |
echo
|
|
|
801 |
echo " run directory + output file -> lagranto.param"
|
|
|
802 |
|
|
|
803 |
# ---------------------------------------------------------------------
|
|
|
804 |
# Run lagranto
|
|
|
805 |
# ---------------------------------------------------------------------
|
|
|
806 |
|
|
|
807 |
echo
|
|
|
808 |
echo '---- RUN LAGRANTO ---------------------------------------'
|
|
|
809 |
echo
|
|
|
810 |
|
|
|
811 |
if ( "${logfile}" != "/dev/stdout" ) then
|
|
|
812 |
echo "log goes to ${logfile}"
|
|
|
813 |
endif
|
|
|
814 |
|
|
|
815 |
# Remove logfile
|
|
|
816 |
if ( "${logfile}" != "/dev/stdout" ) then
|
|
|
817 |
\rm -f ${logfile}
|
|
|
818 |
endif
|
|
|
819 |
|
|
|
820 |
# Run it
|
|
|
821 |
${rundir}/${runscript}.sh > ${logfile}
|
|
|
822 |
|
|
|
823 |
# Check for errors in logfile
|
|
|
824 |
if ( "${logfile}" != "/dev/stdout" ) then
|
|
|
825 |
grep ERROR ${logfile}
|
|
|
826 |
endif
|
|
|
827 |
|
|
|
828 |
# ---------------------------------------------------------------------
|
|
|
829 |
# Make clean and finish lagranto run
|
|
|
830 |
# ---------------------------------------------------------------------
|
|
|
831 |
|
|
|
832 |
# Remove unneeded files
|
|
|
833 |
\rm -f fort.9
|
|
|
834 |
|
|
|
835 |
# Remove files if requested
|
|
|
836 |
if ( "${keepflag}" != "keep" ) then
|
|
|
837 |
|
|
|
838 |
echo
|
|
|
839 |
echo '---- MAKING CLEAN ---------------------------------------'
|
|
|
840 |
echo
|
|
|
841 |
|
|
|
842 |
cd ${rundir}
|
|
|
843 |
|
|
|
844 |
|
|
|
845 |
set runscript = "${runscript}.sh"
|
|
|
846 |
|
|
|
847 |
foreach file ( `\ls -L1` )
|
|
|
848 |
|
|
|
849 |
set id = "0"
|
|
|
850 |
|
|
|
851 |
if ( "${file}" == "${outfile}" ) set id="1"
|
|
|
852 |
if ( "${file}" == "${runscript}" ) set id="1"
|
|
|
853 |
if ( "${file}" == "${logfile}" ) set id="1"
|
|
|
854 |
|
|
|
855 |
if ( "${id}" == "0" ) \rm -f ${file}
|
|
|
856 |
|
|
|
857 |
end
|
|
|
858 |
|
|
|
859 |
endif
|
|
|
860 |
|
|
|
861 |
# Everything is fine!
|
|
|
862 |
echo
|
|
|
863 |
echo ' *** END OF LAGRANTO *** '
|
|
|
864 |
echo '========================================================='
|
|
|
865 |
echo
|
|
|
866 |
|
|
|
867 |
exit 0
|
|
|
868 |
|
|
|
869 |
|